Knockout of a highly GC-rich gene in Burkholderia pyrrocinia by recombineering with freeze-thawing transformation

Genetic transformation is a valuable and essential method that provides powerful insights into the gene function of microorganisms and contributes to the construction of engineered bacteria. Here, we developed a novel genetic transformation system to easily knock out a highly GC-rich gene (74.71% GC) from Burkholderia pyrrocinia JK-SH007, a biocontrol strain of poplar canker disease. This system revealed a reliable selectable marker (trimethoprim resistance gene, Tmp) and a simplified, efficient transformation method (6,363.64 CFU/μg, pHKT2) that was developed via freeze-thawing. The knockout recombineering of B. pyrrocinia JK-SH007 was achieved through a suicide plasmid with a three-fragment mutagenesis construct. The three-fragment cassette for mutagenesis was generated by overlap extension and touchdown PCRs and composed of Tmp flanked by GC-rich upstream and downstream fragments from B. pyrrocinia JK-SH007. The mutant strain (ΔBpEG), which was verified by PCR, lost 93.3% of its ability to degrade carboxymethyl cellulose over 40 days. Overall, this system may contribute to future research on B. pyrrocinia traits.     

葛根芩连汤对泄泻肠道湿热证小鼠肠道双糖酶活性的影响

目的探究葛根芩连汤对泄泻肠道湿热证小鼠肠道双糖酶活性的影响。方法采用“高糖高脂+高温高湿+白酒复合灌胃冰水”的方法制备泄泻肠道湿热证小鼠模型,并运用葛根芩连汤进行干预治疗。分别在干预的第0、2、4、6天无菌采集各组小鼠肠黏膜,运用DNS法测定蔗糖酶活性,ONPG法测定乳糖酶活性,观察葛根芩连汤对泄泻肠道湿热证小鼠肠道双糖酶活性的影响。结果经肠道湿热泄泻造模后,小鼠肠道前段和后段黏膜的乳糖酶和蔗糖酶活性均显著下降,与正常组小鼠相比差异有统计学意义(均P<0.01)。随着治疗时间的延长,治疗组小鼠肠道乳糖酶和蔗糖酶活性与正常组相比有显著的提高(均P<0.05),治疗6 d后,肠道前段黏膜蔗糖酶和乳糖酶活性恢复至正常组水平(P>0.05)。肠道后段乳糖酶活性在第4天时最高,后段黏膜蔗糖酶活性在第6天时最高,与正常组和自愈组相比差异有统计学意义(均P<0.05)。结论泄泻肠道湿热证造模使小鼠肠道黏膜蔗糖酶、乳糖酶等双糖酶的活性显著下降,葛根芩连汤能调节泄泻肠道湿热证小鼠肠道黏膜乳糖酶和蔗糖酶的活性,从而发挥治疗泄泻肠道湿热证的疗效。     

猫儿山铁杉相邻植株冠层机械磨损对枝叶性状的影响

机械磨损是邻体植物冠层接壤区域的重要生态过程之一, 对枝叶生理和形态特征具有重要影响。但是, 当前非常缺乏邻体植物冠层机械磨损对枝叶功能性状影响特征和权衡机制的深入研究。该研究以广西猫儿山的铁杉(Tsuga chinensis)为对象, 通过比较邻体冠层间机械磨损区优势枝、劣势枝与非机械磨损区的叶面积、叶长、叶宽、叶厚、比叶面积、叶干物质含量、叶干质量、末端枝含水率和枝直径的差异, 分析枝叶功能性状在机械磨损影响下的变异和权衡关系。结果显示: 机械磨损显著影响邻体冠层叶干物质含量、比叶面积和叶干质量。具体而言, 机械磨损区优势枝叶干物质含量显著大于劣势枝和非机械磨损区, 优势枝比叶面积显著低于劣势枝和非机械磨损区, 劣势枝叶干质量显著低于优势枝和非机械磨损区。其次, 机械磨损对枝叶性状关系的影响格局不同。叶面积-叶长在机械磨损区优势枝、劣势枝和非机械磨损区间表现出一致的正向关系; 叶面积-叶宽、叶面积-叶干质量、叶宽-叶厚、叶厚-末端枝直径和叶长-叶宽仅在机械磨损区优势枝显著正相关; 叶面积-末端枝直径和末端枝直径-末端枝含水率仅在劣势枝显著负相关; 叶干物质含量-叶厚仅在劣势枝显著正相关。其余性状关系在机械磨损区优势枝、劣势枝和非机械磨损区均不显著。以上结果表明, 森林植物邻体间的冠层机械磨损可显著改变枝叶功能性状的权衡关系。     

长白山源头溪流河床凋落物的分布特征及季节动态

在北方寒冷区,凋落物于秋季大量输入溪流,是水生生物越冬生存的关键。河床凋落物的堆积和组成会直接影响凋落叶分解等关键生态过程,但目前国内关于北方地区溪流河床凋落物分布特征的研究匮乏。在长白山地区一条源头溪流,采用原位取样的方法,探究了溪流河床凋落物的分布特征及季节动态。结果表明:深潭型凋落物斑块的堆积面积和水深显著大于浅滩型凋落物斑块和倒木型凋落物斑块,流速则显著低于其他两种凋落物斑块;倒木型凋落物斑块的堆积厚度显著大于其他两种凋落物斑块。浅滩型凋落物斑块和倒木型凋落物斑块的组成以叶片为主,碎叶片次之,树枝树干最少;深潭型凋落物斑块的组成以碎叶片和树枝树干为主,叶片较少,但秋季和冬季冻结初期除外。冬季雪融期凋落物斑块的堆积厚度显著大于其他时期;春季凋落物斑块的堆积面积显著小于其他时期,水深显著大于其他时期。随着季节变化,浅滩型凋落物斑块中的叶片比例逐渐减少,碎叶片比例逐渐增加;深潭型凋落物斑块中的树枝树干比例逐渐增加。水深与浅滩型凋落物斑块中碎叶片的干重呈显著负相关。溪流内凋落物的分布具有时空差异性,可为寒冷区溪流生态过程后续的研究提供基础数据。     

抑制ATR基因可提高HeLa细胞对烷化剂的敏感性

目的：探讨ATR基因的表达对HeLa细胞对烷化剂敏感性的影响。方法：采用RNA干扰技术抑制HeLa细胞ATR基因的表达,观察ATR被阻断后HeLa细胞对烷化剂敏感性的变化,从而确定ATR基因的作用。结果：筛选到表达针对ATR基因的短发夹RNA（shRNA）阳性克隆,Western印迹结果显示ATR基因表达受到明显抑制;HeLa细胞对烷化剂的敏感性实验提示,ATR shRNA^＋HeLa细胞对烷化剂的敏感性明显增强。结论：抑制ATR基因可明显提高HeLa细胞对烷化剂的敏感性。     

The Active and the Inactive Form of the hAT1 Receptor Have an Identical Ligand-Binding Environment: An MPA Study on a Constitutively Active Angiotensin II Receptor Mutant

Several models of activation mechanisms were proposed for G protein-coupled receptors (GPCRs), yet no direct methods exist for their elucidation. The availability of constitutively active mutants has given an opportunity to study active receptor conformations within acceptable limits using models such as the angiotensin II type 1 (AT₁)¹ receptor mutant N111G-hAT₁ which displays an important constitutive activity. Recently, by using methionine proximity assay, we showed for the hAT₁ receptor that TMD III, VI, and VII form the ligand-binding pocket of the C-terminal amino acid of an antagonistic AngII analogue. In the present contribution, we investigated whether the same residues would also constitute the ligand-binding contacts in constitutively activated mutant (CAM) receptors. For this purpose, the same Met mutagenesis strategy was carried out on the N111G double mutants. Analysis of 43 receptors mutants in the N111G-hAT₁ series, photolabeled and CNBr digested, showed that there were only subtle structural changes between the wt-receptor and its constitutively active form.     

Effects of Bone Marrow-Derived Mesenchymal Stem Cells on the Axonal Outgrowth through Activation of PI3K/AKT Signaling in Primary Cortical Neurons Followed Oxygen-Glucose Deprivation Injury

Background

Transplantation with bone marrow-derived mesenchymal stem cells (BMSCs) improves the survival of neurons and axonal outgrowth after stroke remains undetermined. Here, we investigated whether PI3K/AKT signaling pathway is involved in these therapeutic effects of BMSCs.

Methodology/Principal Findings

(1) BMSCs and cortical neurons were derived from Sprague-Dawley rats. The injured neurons were induced by Oxygen–Glucose Deprivation (OGD), and then were respectively co-cultured for 48 hours with BMSCs at different densities (5×10³, 5×10⁵/ml) in transwell co-culture system. The average length of axon and expression of GAP-43 were examined to assess the effect of BMSCs on axonal outgrowth after the damage of neurons induced by OGD. (2) The injured neurons were cultured with a conditioned medium (CM) of BMSCs cultured for 24 hours in neurobasal medium. During the process, we further identified whether PI3K/AKT signaling pathway is involved through the adjunction of {"type":"entrez-nucleotide","attrs":{"text":"LY294002","term_id":"1257998346","term_text":"LY294002"}}LY294002 (a specific phosphatidylinositide-3-kinase (PI3K) inhibitor). Two hours later, the expression of pAKT (phosphorylated AKT) and AKT were analyzed by Western blotting. The length of axons, the expression of GAP-43 and the survival of neurons were measured at 48 hours.

Results

Both BMSCs and CM from BMSCs inreased the axonal length and GAP-43 expression in OGD-injured cortical neurons. There was no difference between the effects of BMSCs of 5×10⁵/ml and of 5×10³/ml on axonal outgrowth. Expression of pAKT enhanced significantly at 2 hours and the neuron survival increased at 48 hours after the injured neurons cultured with the CM, respectively. These effects of CM were prevented by inhibitor {"type":"entrez-nucleotide","attrs":{"text":"LY294002","term_id":"1257998346","term_text":"LY294002"}}LY294002.

Conclusions/Significance

BMSCs promote axonal outgrowth and the survival of neurons against the damage from OGD in vitro by the paracrine effects through PI3K/AKT signaling pathway.     

HIV-1整合酶链转移反应抑制剂的荧光筛选方法

整合酶被认为是抗HIV-1药物研究的理想靶点之一。为了建立便捷高效的整合酶链转移反应抑制剂筛选方法,首先将HIV-1整合酶原核表达载体pNL-IN转化入大肠杆菌感受态细胞BL21(DE3)进行原核表达,并用镍琼脂糖凝胶进行亲和纯化,获得了纯度和活性均较高的整合酶重组蛋白;然后设计了生物素标记的供体DNA和FITC标记的靶DNA,用链霉亲和素磁珠捕获反应体系中的DNA产物;最后用荧光分析仪检测DNA产物的荧光信号,并计算待测样品的抑制率。用已知整合酶抑制剂S-1360和MK-0518对筛选方法进行了验证,测定结果与已有实验数据相当,表明本筛选方法能够有效应用于HIV-1整合酶链转移反应抑制剂的筛选。与现有的整合酶链转移反应抑制剂筛选方法相比,本筛选方法步骤更为简化、耗时更短、成本更低。     

快速成型技术在颌骨缺损修复中应用的临床研究

目的：研究以CAD／CAM快速成型模型预成钛支架行颌骨缺损功能和外形重建的临床疗效。方法：选择四川大学华西口腔医院收治的5例颌骨良性肿瘤患者,术前螺旋CT及快速成型技术预成实体模型,并通过反求工程技术将健侧颌骨外形复制,制备钛修复体行患侧缺损修复,观察术后效果。结果：术后3个月、6个月复查患者对自身颌骨功能及外形较满意,均未出现因修复体导致的严重不良反应,张口度都接近恢复至正常,张口运动未出现明显异常,咬合关系良好。结论：运用快速成型技术设计并利用反求工程技术制造的个性化修复体进行颌骨缺损修复的方法能较好地恢复患者颌面部的功能和外形,副反应小,可以达到比较满意的修复效果。     

类风湿关节炎药物治疗的规范化及临床实践探析

目的：在前人研究基础上进一步调查和研究类风湿关节炎（RA）患者药物治疗的规范化状况。方法：对湘潭市中心医院2012年3月至12月门诊就诊的120例风湿关节炎患者进行问卷调查。内容包括患者个人资料、就诊及确诊时间、科室,随诊时间间隔以及改善病情抗风湿药（DMARDs）的应用情况。结果：类风湿关节炎药物治疗不规范,甲氨蝶呤是患者应用最多的DMARDs,占60％,其次为来氟米特（30％）、柳氮磺吡啶（5％）及羟氯喹（5％）。结论：51％以上的RA病人DMARDs治疗不规范,尤其是在县级基层医院。类风湿性疾病的规范治疗需要从早期诊断治疗,优化联合用药,个性化治疗,定期跟踪疗效等方面来规范。